This page contains data and other files for some of our publications:

• Remington, D., J Thornsberry, Y. Matsuoka, L. Wilson, S. Whitt, J. Doebley, S. Kresovich, M. Goodman and E. Buckler. 2001. Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc. Natl. Acad. Sci. USA 98(20):11479-11484.   [Link to Article]

  [SSR data for inbreds] Six SSR loci were scored by both Cornell University and Celera AgGen. Because Celera AgGen adds a 5 bp clamp to the end of one primer, the allele sizes for these six SSRs from these two sources differ by 5 or 6 basepair. Some lines were also assayed multiple times by Celera AgGen. Differences among these assays could reflect either line polymorphisms or genotyping errors.

• Thornsberry, J., M. Goodman, J. Doebley, S. Kresovich, D. Nielsen and E. Buckler. 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics 28: 286-289. [Link to Article]

  [SSR data for inbreds]

• Matsuoka, Y., Y. Vigouroux, M. M. Goodman, J. Sanchez G., E. Buckler and J. Doebley. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Acad. Sci. USA 99:6080-6084.   [Link to Article]

  [datafile] [list of plant samples] [list of seed sources] [list of SSR loci]

• Matsuoka, Y., S. E. Mitchell, S. Kresovich, M. Goodman and J. Doebley. 2002. Microsatellites in Zea - variability, patterns of mutations, and use for evolutionary studies. Theor. Appl. Genet. 104:436-450.   [Link to Article]

  [data for maize inbreds] [data for teosinte & maize landraces]

• Vigouroux, Y., M. McMullen, C. T. Hittinger, K. Houchins, L. Schulz, S. Kresovich, Y. Matsuoka and J. Doebley. 2002. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc. Natl. Acad. Sci. USA 99: 9650-9655.   [Link to Article]

  [SSR data] [AI737167 aligned sequences]

• Vigouroux, Yves., Jennifer S. Jaqueth, Yoshihiro Matsuoka, Oscar S. Smith, William D. Beavis, J. Stephen C. Smith and John Doebley. 2002. Rate and pattern of mutation at microsatellite loci in maize. Mol. Biol. Evol. 19: 1251-1260.   [Link to Article]

  [SSR data]

• Liu, K., M. M. Goodman, S. Muse, J. S. C. Smith, E. S. Buckler, and J. Doebley. 2003. Genetic structure and diversity among maize Inbred lines as inferred from DNA microsatellites. Genetics 165: 2117-2128.   [Link to Article]

  [data set] [Fig S1] [Table S1] [Table S2] [Table S3] [Table S4] [Table S5] [Table S6] [Table S7]

• Here you can dowload data for nearly 1000 maize SNP in sets of randomly chosen maize genes and genes selected as candidates to control plant phenotypes. The data you can download include the context sequence and SNP allele frequencies in maize and teosinte. Selected SNP are indicated in square brackets [], and other polymorphisms in curly brackets {}. A manuscript describing these SNP will be prepared for publication in 2005. Further information on these SNP is (or will be) available at www.panzea.org

  [SNP for random maize genes] [SNP for selected phenotype candidate genes]

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